Package: QUILT
Type: Package
Title: QUILT
Version: 2.0.4.9000
Date: 2026-07-13
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
           email = "sounkoutoure@gmail.com", role = c("aut", "cre"),
           comment = "Maintainer of the Abiomix fork"),
    person(given = "Abiomix FZ LLC", role = c("cph", "fnd"),
           comment = "Copyright holder and funder of Abiomix contributions"),
    person("Robert", "Davies", , "robertwilliamdavies@gmail.com", role = "aut"),
    person("Zilong", "Li", , "zilong.dk@gmail.com", role = "aut")
  )
Description: QUILT2 is an R and C++ program for fast genotype calling
        from sequencing reads using a large reference panel. QUILT2 is
        accurate and versatile, able to handle imputation from short
        read, long read, ancient DNA and cell-free DNA from NIPT.
Installation: To install, first install dependencies, then run the
        install.packages command, pointing to the downloaded tarball
        (QUILT.tar.gz)
Getting started: Please see github README.
Depends: R (>= 4.0.0), STITCH (>= 1.8.2), mspbwt (>= 0.1.0), data.table
Remotes: rwdavies/STITCH/STITCH, rwdavies/mspbwt/mspbwt
Imports: Rcpp
LinkingTo: Rcpp, RcppArmadillo, RcppEigen (>= 0.3.4.0.0)
RoxygenNote: 7.3.2
License: GPL (>= 3) | file LICENSE
SystemRequirements: C++17
NeedsCompilation: yes
Suggests: testthat (>= 3.0.0)
Config/testthat/edition: 3
Additional_repositories: https://abiomix.r-universe.dev
URL: https://github.com/abiomix/abiomix-r-open,
        https://github.com/rwdavies/QUILT
BugReports: https://github.com/abiomix/abiomix-r-open/issues
Config/abiomix/public-license: GPL-3.0-or-later
Config/abiomix/commercial-license: Separate written agreement for
        Abiomix-owned contributions
Config/abiomix/license-policy:
        https://github.com/abiomix/abiomix-r-open/blob/main/LICENSES.md
Repository: https://abiomix.r-universe.dev
Date/Publication: 2026-07-13 08:37:42 UTC
RemoteUrl: https://github.com/abiomix/abiomix-r-open
RemoteRef: HEAD
RemoteSha: dd82290ba296385fcc7d7dfed339886e9deb41a2
RemoteSubdir: packages/QUILT
Packaged: 2026-07-13 08:43:40 UTC; root
Author: Sounkou Mahamane Toure [aut, cre] (Maintainer of the Abiomix fork),
  Abiomix FZ LLC [cph, fnd] (Copyright holder and funder of Abiomix
    contributions),
  Robert Davies [aut],
  Zilong Li [aut]
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>