Package: RBCFTools
Title: Packaged 'BCFtools' and 'HTSlib' Command-Line Tools
Version: 1.23-0.0.4.9000
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure", 
    email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "Abiomix FZ LLC", role = c("cph", "fnd"),
           comment = "Copyright holder and funder of Abiomix contributions"),
    person( given = "Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas Davies, Robert M, Pierre Lindenbaum",  role = "cph",
           comment = "Authors of included htslib library and bcftools command line tools"),
    person(given = "Zilong", family = "Li", email = "zilong.dk@gmail.com", role = c("cph"),
           comment = "Author of the vcfpp library from whom makefiles and configure strategy is borrowed"),
    person(given = "Giulio", family = "Genovese", email = "giulio.genovese@gmail.com", role = "cph", comment = "Author of BCFTools munge plugin"))
Description: Builds and installs pinned 'bcftools' and 'htslib'
        command-line tools, including packaged plugins such as liftover
        and score. Provides executable discovery, deterministic plugin
        environment configuration, version inspection, and structured
        process execution. Variant table, 'DuckDB', 'DuckLake', Arrow,
        Parquet, and annotation APIs are intentionally owned by
        'Rduckhts' rather than duplicated here.
License: GPL (>= 3)
Copyright: See inst/AUTHORS
Depends: R (>= 4.1.0)
Imports: processx
SystemRequirements: GNU make, pkg-config, libcurl, libgsl, libdeflate,
        libbzip2, libzlib, libssl-dev (or other ssl library), liblzma,
        libsuitesparse-dev/libcholmod5 (optional for pgs plugin)
Suggests: tinytest
OS_type: unix
URL: https://github.com/abiomix/abiomix-r-open,
        https://github.com/RGenomicsETL/RBCFTools,
        https://rgenomicsetl.github.io/RBCFTools/
BugReports: https://github.com/abiomix/abiomix-r-open/issues
Config/abiomix/public-license: GPL-3.0-or-later
Config/abiomix/commercial-license: Separate written agreement for
        Abiomix-owned contributions
Config/abiomix/license-policy:
        https://github.com/abiomix/abiomix-r-open/blob/main/LICENSES.md
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: make libgsl0-dev liblzma-dev pkg-config
Repository: https://abiomix.r-universe.dev
Date/Publication: 2026-07-13 08:37:42 UTC
RemoteUrl: https://github.com/abiomix/abiomix-r-open
RemoteRef: HEAD
RemoteSha: dd82290ba296385fcc7d7dfed339886e9deb41a2
RemoteSubdir: packages/RBCFTools
NeedsCompilation: yes
Packaged: 2026-07-13 11:47:46 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Abiomix FZ LLC [cph, fnd] (Copyright holder and funder of Abiomix
    contributions),
  Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and
    Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas Davies, Robert
    M, Pierre Lindenbaum [cph] (Authors of included htslib library and
    bcftools command line tools),
  Zilong Li [cph] (Author of the vcfpp library from whom makefiles and
    configure strategy is borrowed),
  Giulio Genovese [cph] (Author of BCFTools munge plugin)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>