Package: Rminibwa
Title: Native R Bindings and SIMD Dispatch for 'minibwa'
Version: 0.4.0-0.0.1.9000
Authors@R: c(
    person(given = "Sounkou Mahamane", family = "Toure",
      email = "sounkoutoure@gmail.com", role = c("aut", "cre")),
    person(given = "Abiomix FZ LLC", role = c("cph", "fnd"),
      comment = "Copyright holder and funder of Abiomix contributions"),
    person(given = "Dana-Farber Cancer Institute", role = "cph",
      comment = "Copyright holder of upstream minibwa"),
    person(given = "Ilya", family = "Grebnov", role = "cph",
      comment = "libsais copyright holder"),
    person(given = "N. Jesper", family = "Larsson", role = "cph",
      comment = "QSufSort copyright holder"),
    person(given = "Wong", family = "Chi Kwong", role = "cph",
      comment = "BWT-SW/bwtgen copyright holder")
  )
Description: Provides native R bindings to the 'minibwa' genomic read
        aligner with raw-vector query input, external-pointer alignment
        batches, ALTREP column views, and an installed C API for
        downstream packages. The package builds staged Single
        Instruction Multiple Data ('SIMD') KSW backends and selects
        portable scalar, SSE4, or AVX2 code at runtime without global
        instruction-set compiler flags.
License: GPL (>= 2)
Depends: R (>= 4.0.0)
SystemRequirements: GNU make, zlib
LinkingTo: RsimdDispatch (>= 0.1.2.9001)
Suggests: knitr, rmarkdown, roxygen2, Rtinycc, tinytest
VignetteBuilder: knitr
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Additional_repositories: https://abiomix.r-universe.dev
URL: https://github.com/abiomix/abiomix-r-open,
        https://github.com/sounkou-bioinfo/Rminibwa,
        https://sounkou-bioinfo.github.io/Rminibwa/
BugReports: https://github.com/abiomix/abiomix-r-open/issues
Config/abiomix/public-license: GPL-2.0-or-later
Config/abiomix/commercial-license: Separate written agreement for
        Abiomix-owned contributions
Config/abiomix/license-policy:
        https://github.com/abiomix/abiomix-r-open/blob/main/LICENSES.md
Config/pak/sysreqs: make zlib1g-dev
Repository: https://abiomix.r-universe.dev
Date/Publication: 2026-07-13 08:37:42 UTC
RemoteUrl: https://github.com/abiomix/abiomix-r-open
RemoteRef: HEAD
RemoteSha: dd82290ba296385fcc7d7dfed339886e9deb41a2
RemoteSubdir: packages/Rminibwa
NeedsCompilation: yes
Packaged: 2026-07-13 12:23:27 UTC; root
Author: Sounkou Mahamane Toure [aut, cre],
  Abiomix FZ LLC [cph, fnd] (Copyright holder and funder of Abiomix
    contributions),
  Dana-Farber Cancer Institute [cph] (Copyright holder of upstream
    minibwa),
  Ilya Grebnov [cph] (libsais copyright holder),
  N. Jesper Larsson [cph] (QSufSort copyright holder),
  Wong Chi Kwong [cph] (BWT-SW/bwtgen copyright holder)
Maintainer: Sounkou Mahamane Toure <sounkoutoure@gmail.com>