{ "_id": "6a54a925ff0138dec5d6644b", "Package": "QUILT", "Type": "Package", "Title": "QUILT", "Version": "2.0.4.9000", "Date": "2026-07-13", "Authors@R": "c(\nperson(given = \"Sounkou Mahamane\", family = \"Toure\",\nemail = \"sounkoutoure@gmail.com\", role = c(\"aut\", \"cre\"),\ncomment = \"Maintainer of the Abiomix fork\"),\nperson(given = \"Abiomix FZ LLC\", role = c(\"cph\", \"fnd\"),\ncomment = \"Copyright holder and funder of Abiomix contributions\"),\nperson(\"Robert\", \"Davies\", , \"robertwilliamdavies@gmail.com\", role = \"aut\"),\nperson(\"Zilong\", \"Li\", , \"zilong.dk@gmail.com\", role = \"aut\")\n)", "Description": "QUILT2 is an R and C++ program for fast genotype calling\nfrom sequencing reads using a large reference panel. QUILT2 is\naccurate and versatile, able to handle imputation from short\nread, long read, ancient DNA and cell-free DNA from NIPT.", "Installation": "To install, first install dependencies, then run the\ninstall.packages command, pointing to the downloaded tarball\n(QUILT.tar.gz)", "Getting started": "Please see github README.", "Remotes": [ "rwdavies/STITCH/STITCH", "rwdavies/mspbwt/mspbwt" ], "RoxygenNote": "7.3.2", "License": "GPL (>= 3) | file LICENSE", "SystemRequirements": "C++17", "NeedsCompilation": "yes", "Config/testthat/edition": "3", "Additional_repositories": "https://abiomix.r-universe.dev", "URL": "https://github.com/abiomix/abiomix-r-open,\nhttps://github.com/rwdavies/QUILT", "BugReports": "https://github.com/abiomix/abiomix-r-open/issues", "Config/abiomix/public-license": "GPL-3.0-or-later", "Config/abiomix/commercial-license": "Separate written agreement for\nAbiomix-owned contributions", "Config/abiomix/license-policy": "https://github.com/abiomix/abiomix-r-open/blob/main/LICENSES.md", "Repository": "https://abiomix.r-universe.dev", "Date/Publication": "2026-07-13 08:37:42 UTC", "RemoteUrl": "https://github.com/abiomix/abiomix-r-open", "RemoteRef": "HEAD", "RemoteSha": "dd82290ba296385fcc7d7dfed339886e9deb41a2", "RemoteSubdir": "packages/QUILT", "Packaged": { "Date": "2026-07-13 08:43:40 UTC", "User": "root" }, "Author": "Sounkou Mahamane Toure [aut, cre] (Maintainer of the Abiomix fork),\nAbiomix FZ LLC [cph, fnd] (Copyright holder and funder of Abiomix\ncontributions),\nRobert Davies [aut],\nZilong Li [aut]", "Maintainer": "Sounkou Mahamane Toure ", "_user": "abiomix", "_type": "src", "_file": "QUILT_2.0.4.9000.tar.gz", "_fileid": "https://r2.ropensci.org/401769db4c45d0aab79a00d402c5d62a3b5b25cde4dc0863d4394d83d8c0af3c", "_filesize": 428185, "_sha256": "401769db4c45d0aab79a00d402c5d62a3b5b25cde4dc0863d4394d83d8c0af3c", "_expires": "2026-10-21T09:00:19.000Z", "_created": "2026-07-13T08:43:40.000Z", "_published": "2026-07-13T09:00:21.459Z", "_jobs": [ { "job": 86772331949, "time": 377, "config": "linux-devel-arm64", "r": "4.7.0", "check": "ERROR", "artifact": "8273772820" }, { "job": 86772331903, "time": 356, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "8273764590" }, { "job": 86772331917, "time": 351, "config": "linux-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "8273764294" }, { "job": 86772331933, "time": 368, "config": "linux-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "8273769287" }, { "job": 86772332002, "time": 132, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 86772331959, "time": 301, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 86772331911, "time": 279, "config": "macos-release-arm64", "r": "4.6.1", "check": "ERROR", "artifact": "8273829088" }, { "job": 86772331948, "time": 544, "config": "macos-release-x86_64", "r": "4.6.1", "check": "ERROR", "artifact": "8273974681" }, { "job": 86771202464, "time": 362, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8273628919" }, { "job": 86772331900, "time": 96, "config": "wasm-release", "r": "4.6.0", "check": "FAIL", "artifact": "" }, { "job": 86772331923, "time": 149, "config": "windows-devel", "r": "4.7.0", "check": "FAIL", "artifact": "" }, { "job": 86772331934, "time": 123, "config": "windows-oldrel", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 86772331963, "time": 108, "config": "windows-release", "r": "4.6.1", "check": "FAIL", "artifact": "" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/abiomix/actions/runs/29236140959", "_status": "success", "_upstream": "https://github.com/abiomix/abiomix-r-open", "_commit": { "id": "dd82290ba296385fcc7d7dfed339886e9deb41a2", "author": "sounkou-bioinfo ", "committer": "sounkou-bioinfo ", "message": "Update bundled minibwa to upstream 0.4\n\nRefresh the pinned native sources to minibwa 0.4-r400 while retaining the reviewed portability and SIMD patch queue. 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