abiomix.r-universe.dev

[abiomix] htmxr 0.3.0

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

A lightweight framework for building server-driven web applications in 'R'. 'htmxr' combines the simplicity of 'htmx' for partial page updates with the power of 'plumber2' for non-blocking HTTP endpoints. Build interactive dashboards and data applications without writing 'JavaScript', using familiar 'R' patterns inspired by 'Shiny'. For more information on 'htmx', see .

[abiomix] Ropendal 0.0.1.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Provides a byte-oriented abstract filesystem interface for R backed by the Rust crate of 'Apache OpenDAL' . The package is designed around filesystem primitives, asynchronous Aio-like operations inspired by 'nanonext', pluggable raw-vector serializers, and a native C API for direct async byte access by other R packages.

[abiomix] RsimdDispatch 0.1.2.9002

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Provides templates and a working example for runtime Single Instruction Multiple Data ('SIMD') dispatch in 'C' code used by 'R' packages. Packages can stage scalar and architecture-specific kernel objects during configuration, then select compiled and CPU-supported implementations at runtime through guarded operation tables. The package also vendors the header-only 'SIMDe' library for downstream packages through the 'LinkingTo' field.

[abiomix] QUILT 2.0.4.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

QUILT2 is an R and C++ program for fast genotype calling from sequencing reads using a large reference panel. QUILT2 is accurate and versatile, able to handle imputation from short read, long read, ancient DNA and cell-free DNA from NIPT.

[abiomix] s7contract 0.1.0.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Contract helpers built with 'S7' for expressing runtime protocols around ordinary 'S7' dispatch. Structural interfaces describe small sets of required 'S7' generics, while explicit traits record registered implementations with optional default methods and associated metadata. Optional runtime checks can validate argument and return specifications in contract-scoped evaluation.

[abiomix] Rtinycc 0.1.11.9001

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Builds the 'TinyCC' (Tiny 'C' Compiler) command-line interface and library for package use in 'R'. The package compiles 'TinyCC' from source and provides R functions to interact with the compiler. 'TinyCC' can be used for header preprocessing, just-in-time compilation of 'C' code in 'R', and lightweight 'C' scripting workflows.

[abiomix] RBCFTools 1.23-0.0.4.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Builds and installs pinned 'bcftools' and 'htslib' command-line tools, including packaged plugins such as liftover and score. Provides executable discovery, deterministic plugin environment configuration, version inspection, and structured process execution. Variant table, 'DuckDB', 'DuckLake', Arrow, Parquet, and annotation APIs are intentionally owned by 'Rduckhts' rather than duplicated here.

[abiomix] Rducks 0.1.1.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

R package and 'DuckDB' extension bridge for registering R functions as 'DuckDB' user-defined functions (UDFs). The package is designed around a loaded 'DuckDB' extension, declarative type descriptors, direct native vector marshalling, and explicit execution discipline for safe interaction with R from 'DuckDB' execution. The inter-process worker transport uses vendored 'NNG' (nanomsg next generation).

[abiomix] Rminibwa 0.4.0-0.0.1.9000

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Provides native R bindings to the 'minibwa' genomic read aligner with raw-vector query input, external-pointer alignment batches, ALTREP column views, and an installed C API for downstream packages. The package builds staged Single Instruction Multiple Data ('SIMD') KSW backends and selects portable scalar, SSE4, or AVX2 code at runtime without global instruction-set compiler flags.

[abiomix] httpuv 1.6.16.9001

sounkoutoure@gmail.com (Sounkou Mahamane Toure) — Mon, 13 Jul 2026 08:37:42 GMT

Provides low-level socket and protocol support for handling HTTP and WebSocket requests directly from within R. It is primarily intended as a building block for other packages, rather than making it particularly easy to create complete web applications using httpuv alone. httpuv is built on top of the libuv and http-parser C libraries, both of which were developed by Joyent, Inc. (See LICENSE file for libuv and http-parser license information.)