Package: RBCFTools 1.23-0.0.4.9000

Sounkou Mahamane Toure

RBCFTools: Packaged 'BCFtools' and 'HTSlib' Command-Line Tools

Builds and installs pinned 'bcftools' and 'htslib' command-line tools, including packaged plugins such as liftover and score. Provides executable discovery, deterministic plugin environment configuration, version inspection, and structured process execution. Variant table, 'DuckDB', 'DuckLake', Arrow, Parquet, and annotation APIs are intentionally owned by 'Rduckhts' rather than duplicated here.

Authors:Sounkou Mahamane Toure [aut, cre], Abiomix FZ LLC [cph, fnd], Bonfield, James K and Marshall, John and Danecek, Petr and Li, Heng and Ohan, Valeriu and Whitwham, Andrew and Keane, Thomas Davies, Robert M, Pierre Lindenbaum [cph], Zilong Li [cph], Giulio Genovese [cph]

RBCFTools_1.23-0.0.4.9000.tar.gz

RBCFTools_1.23-0.0.4.9000.tgz(r-4.6-x86_64)RBCFTools_1.23-0.0.4.9000.tgz(r-4.6-arm64)RBCFTools_1.23-0.0.4.9000.tgz(r-4.5-x86_64)RBCFTools_1.23-0.0.4.9000.tgz(r-4.5-arm64)
RBCFTools_1.23-0.0.4.9000.tar.gz(r-4.7-arm64)RBCFTools_1.23-0.0.4.9000.tar.gz(r-4.7-x86_64)RBCFTools_1.23-0.0.4.9000.tar.gz(r-4.6-arm64)RBCFTools_1.23-0.0.4.9000.tar.gz(r-4.6-x86_64)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RBCFTools/json (API)

# Install 'RBCFTools' in R:
install.packages('RBCFTools', repos = c('https://abiomix.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/abiomix/abiomix-r-open/issues

Pkgdown/docs site:https://rgenomicsetl.github.io

On CRAN:

Conda:

2.13 score 27 scripts 21 exports 3 dependencies

Last updated from:dd82290ba2. Checks:12 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK300
linux-devel-x86_64OK319
source / vignettesOK411
linux-release-arm64OK366
linux-release-x86_64OK318
macos-release-arm64OK237
macos-release-x86_64OK522
macos-oldrel-arm64OK160
macos-oldrel-x86_64OK453
windows-develOK55
windows-releaseOK78
windows-oldrelOK69
wasm-releaseFAIL253

Exports:annot_tsv_pathbcftools_bin_dirbcftools_pathbcftools_pluginsbcftools_plugins_dirbcftools_runbcftools_toolsbcftools_versionbgzip_pathhtsfile_pathhtslib_bin_dirhtslib_plugins_dirhtslib_toolshtslib_versionrbcftools_binaryrbcftools_capabilitiesrbcftools_runrbcftools_versionsref_cache_pathsetup_hts_envtabix_path

Dependencies:processxpsR6

Readme and manuals

Help Manual

Help pageTopics
Run the packaged bcftools executablebcftools_run
Locate a packaged native executableannot_tsv_path bcftools_path bgzip_path htsfile_path rbcftools_binary ref_cache_path tabix_path
Report the installed binary surfacerbcftools_capabilities
Locate packaged tool directoriesbcftools_bin_dir bcftools_plugins_dir htslib_bin_dir htslib_plugins_dir rbcftools_directories
List packaged tools and pluginsbcftools_plugins bcftools_tools htslib_tools rbcftools_inventory
Run a packaged native toolrbcftools_run
Inspect packaged native-tool versionsbcftools_version htslib_version rbcftools_versions
Configure native-tool plugin lookup for the current R processsetup_hts_env